USA Department of Biochemistry & Molecular Biology Faculty

Academic Faculty

▼   Ronald D. Balczon, Ph.D.

Ronald D. Balczon, Ph.D.Ronald D. Balczon, Ph.D.

Associate Professor

Postdoctoral Studies, Baylor College of Medicine and University of Alabama at Birmingham
Ph.D., Florida State University

Recent Publications

 

Research Interests

My research is focused on the role of the microtubule cytoskeleton in health and disease.  Our past research has investigated how microtubules maintain the pulmonary endothelial cell barrier and how disruption of microtubules leads to pulmonary edema.  These studies have identified a critical role for the microtubule-associated protein tau in maintaining endothelial barrier function and have demonstrated that inhibition of tau activity leads to barrier breakdown and edema.  Our more recent studies have focused on barrier disruption following infection with Pseudomonas aeruginosaPseudomonas aeruginosa infection is a principal cause of acute pneumonia that can progress to sepsis, acute lung injury, and death.  During infection, Pseudomonas uses a type III secretion system to transfer bacterial exoenzymes into the cytoplasm of target cells.  Our studies have shown that one of these exoenzymes, ExoY, targets tau resulting in defective microtubule dynamics, pulmonary endothelial breakdown, and edema.  Studies in progress are investigating long-term effects of Pseudomonas infection on patient health and survival.

Publications 

  1. Wu, S., Chen, H., Alexeyev, M.F., King, J.A.C., Moore, T.M., Stevens, T, and Balczon, R.D. 2007. Microtubule motors regulate ISOC activation necessary to increase endothelial cell permeability. J. Biol. Chem. 282:34801-34808.
  2. Prasain, N., Alexeyev, M., Balczon, R., and Stevens, T. 2009. Soluble adenylyl cyclase-dependent microtubule disassembly reveals a novel mechanism of endothelial cell retraction. Am. J. Physiol. Lung Cell Molec. Physiol. 297:L73-83. PMCID: PMC2711814.
  3. Ochoa, C.D., Stevens, T., and Balczon, R. 2011. Cold exposure reveals two populations of microtubules in pulmonary endothelia. Am. J. Physiol. Lung Cell Molec. Physiol. 300:L132-138.
  4. Sayner, S.L., Balczon, R., Frank, D.W., Cooper, D.M., and Stevens, T. 2011. Filamin A is a phosphorylation target of membrane but not cytosolic adenylyl cyclase activity. Am. J. Physiol. Lung Cell Molec. Physiol. 300:L132-138.
  5. Zeng, H., Pappas, C., Belser, J.A., Houser, K.V., Zhong, W., Wadford, D.A., Stevens, T., Balczon, R., Katz, J.M., and Tumpey, T.M. 2012. Human pulmonary microvascular endothelial cells support productive replication of highly pathogenic avian influenza viruses: possible involvement in the pathogenesis of human H5N1 virus infection. J. Virology 86:667-678.
  6. Ochoa, C.D., Alexeyev, M., Pastukh, V., Balczon, R., and Stevens, T. 2012. Pseudomonas aeruginosa exotoxin Y is a promiscuous cyclase that increases endothelial cell tau phosphorylation and permeability. J. Biol. Chem. 287:25407-25418.
  7. Balczon, R., Prasain, N., Ochoa, C., Prater, J., Zhu, B., Alexeyev, M., Sayner, S., Frank, D.W., and Stevens, T. 2013. Pseudomonas aeruginosa exotoxin Y-mediated tau hyperphosphorylation impairs microtubule assembly in pulmonary microvascular endothelial cells. PLoS One 8:e74343.
  8. Stevens, Tr., Ochoa, C., Morrow, K., Robson, M., Prasain, N., Zhou, C., Alvarez, D., Frank, D., Balczon, R., and Stevens, T. 2014. The Pseudomonas aeruginosa exotoxin Y impairs endothelial cell proliferation and vascular repair following lung injury. Am. J. Physiol. Lung Cell Molec. Physiol. 306:L915-L924.
▼   Christopher Davies Ph.D.

Physician name, Ph.D.Dr. Christopher Davies, Ph.D.

Professor and Associate Dean for Research

Ph.D., University of Bristol

 

Research Interests

The primary interest of my laboratory is structure and function investigations of enzymes involved in peptidoglycan metabolism in bacteria. Much of our work to date has focused on penicillin-binding proteins (PBPs), starting with investigations of catalytic mechanism and then progressing to understanding mechanisms of antibiotic resistance. Our investigations have included PBPs from E. coli, M. tuberculosis, P. aeruginosa and N. gonorrhoeae. A major focus at present is to understand the impact of mutations in penicillin-binding protein 2 (PBP2) derived from cephalosporin-resistant strains of N. gonorrhoeae (including H041, identified in Japan, and F89, identified in France). Such strains signal a possible end to treatable gonorrhea and it is therefore important to elucidate the molecular mechanisms underlying antibiotic resistance. In particular, we seek to understand how mutations in PBP2 lower inhibition by cephalosporins without affecting the essential transpeptidase reaction with peptide substrate. The long-term goal is to employ this information for the design of new anti-gonococcal agents that overcome resistance mechanisms.

Toward that goal, we are increasingly engaged in drug discovery and development efforts targeting N. gonorrhoeae PBP2. Current efforts are directed toward testing and optimization of non-β-lactam PBP2 inhibitors identified through high-throughput screening against chemical and in silico libraries, and we are also working with a pharmaceutical company who are developing lead inhibitors of PBP2. 

▼   Simon Grelet Ph.D.

Simon Grelet Ph.D.Simon Grelet, Ph.D.

Assistant Professor

Postdoctoral Studies, Medical University of South Carolina, Hollings Cancer Center 
Ph.D., Reims University, France 

 

Research Interests

Embryo-related tumor cell plasticity & primary tumor neurogenesis. 

Metastasis is the overwhelming cause of mortality in patients with solid tumors. To survive and disseminate, the tumor cells need to constantly adapt to their surrounding environment. Tumor cell plasticity associated with the epithelial-mesenchymal transition (EMT), a program observed in embryonic development, is reactivated during carcinomas progression and correlates with tumor dissemination and resistance to therapies. While observed in vivo, the EMT program is a highly dynamic and often incomplete process, resulting in cells exhibiting diverse intermediate states that maintain both epithelial and mesenchymal characteristics.

My laboratory explores the molecular mechanisms that are balancing tumor cell phenotypes and their biological impacts on the tumor microenvironment. By using genome-wide sequencing methodologies and CRISPR gene editing libraries applied to lineage tracing models, we identify new factors involved in the tumor-stroma interaction. Our current research focuses on primary tumor neurogenesis with a special emphasis on the contribution of post-transcriptional regulation and non-coding RNA species in this biological process.

Tumor neurogenesis is closely related to metastatic progression and is associated with poor clinical outcomes. The little-understood molecular mechanisms of cancer–nerve crosstalk represent therapeutic opportunities and our approach is intended to provide new tools in the prevention of cancer dissemination.

Research training positions are available for postdoc and graduate students. Email grelet.lab@gmail.com

Research training will provide you the skills that are required for studying the Molecular Biology of the Cell as well as critical knowledge in the areas of both Cancer/Neuron cell Biology and Bioinformatics applied to high-throughput methodologies.

 

▼   Richard E. Honkanen, Ph.D.

Richard E. Honkanen, Ph.D.Richard E. Honkanen, Ph.D.

Professor and Chair

Ph.D., University of Georgia, 1986

Recent Publications

 

Research Interests

Protein Phosphatases ( Molecular mechanisms of carcinogenesis; Mechanisms of cardioprotective agents in ischemic myocytes).

The reversible phosphorylation of many proteins determines their biological activity and is a key mechanism controlling intracellular events as diverse as metabolism, contractility, cell division, hormonal action and signal transduction. This phosphorylation/dephosphorylation of proteins occurs on specific serine, threonine, or tyrosine residues and represents a dynamic equilibrium between the activities of both protein kinases and protein phosphatases.

In my laboratory, we are currently studying the molecular mechanisms associated with cancer, coronary heart disease and diabetes. The common theme of our research is the functions of specific protein phosphatases. A major goal of our cancer research is to identify and clone novel protein phosphatases that may play a role in the aberrant proliferative behavior of neoplastic cells. We have also identified a number of natural marine toxins with specific and potent inhibitory activity against certain protein phosphatases. Some of these "toxins" alter the cell cycle progression of tumor cells in culture, and we are interested in determining if these compounds have the potential for development into novel drugs for the treatment of certain cancers. We are also developing techniques to better use these phosphatase inhibitors for the identification of novel protein phosphatases and to study the roles of specific phosphatases in normal and aberrant cellular functions. We are also interested in the identification and development of novel type specific inhibitors.

2011 NIH Director's Transformative RO1 Award: Methods To Enable Cholesterol Catabolism In Human Monocyte Derived Macrophages 

▼   Steve (Ssang-Taek) Lim, Ph.D.

Steve (Ssang-Taek) Lim, Ph.D.Steve (Ssang-Taek) Lim, Ph.D.

Associate Professor

Postdoctoral Studies, University of California, San Diego
Ph.D., University of Alabama at Birmingham, 2003

Visit the Lim Lab Website

Recent Publications

 

Research Interests

Integrin signaling underlies a multitude of biological phenomenon throughout development, physiological homeostasis, chronic disease progression, and cancer malignancy. We are interested in integrin-associated focal adhesion kinase (FAK) signaling in disease models such as vascular inflammation and cancer metastasis. FAK is a protein tyrosine kinase named for its localization to integrin adhesion sites called focal adhesions. FAK is a converging point of cellular signaling via integrins and growth factor receptors. Interestingly, FAK also localizes to the nucleus to regulate gene expression by controlling a number of transcription factors (e.g., p53, GATA4).

Our current research focus is to understand a molecular mechanism how and why FAK shuttles to convey extracellular/adhesion signals to the nucleus. Based on the recent finding that the nuclear-localized FAK limits GATA4 required for vascular cell adhesion molecule-1 (VCAM-1) transcription and VCAM-1 plays a key role in promoting vascular inflammation by facilitating leukocyte recruitment, we are investigating whether nuclear FAK regulates vascular inflammation. We have genetic FAK mouse models to evaluate an inflammatory role of FAK in vascular injury models.

Another area of our research is to explore a mechanism of tumor metastasis via tumor-stroma interaction. Although the typical metastasis of melanoma to the lymph nodes is detrimental to overall survival of melanoma patients, molecular mechanisms of this process remain elusive. We are investigating the role of FAK-mediated VCAM-1 expression on lymphatic vessel endothelium in melanoma metastasis to the lymph nodes, using a genetic mouse model and FAK inhibitors. Successful completion of the project will reveal a highly significant value of FAK inhibitors as a novel drug for prevention of melanoma metastasis.

Research training positions are available for postdoc and graduate students.

Research training in our lab will provide you skills necessary for studying molecular/cell biology, biochemistry, mouse genetics and also provide you key concepts in cellular signaling, gene expression, cancer biology and vascular biology.

▼   Aishwarya Prakash Ph.D.

Aishwarya Prakash, Ph.D.Aishwarya Prakash, Ph.D.

Associate Professor

Postdoctoral Studies, University of Vermont
Ph.D., University of Nebraska Medical Center 

 

Research Interests

Various factors in our environment including ionizing radiation, chemicals found in cigarette smoke, herbicides, and known carcinogenic metals as well as normal cellular processes, generate reactive oxygen species (ROS) in a cell. ROS cause assault to DNA that leads to nuclear and mitochondrial DNA (mtDNA) damage where unrepaired damage to DNA results in mutagenesis and diseases including premature aging, neurodegenerative disorders, and various cancers. I began my independent research career as a tenure-track Assistant Professor at the University of South Alabama Mitchell Cancer Institute, Department of Biochemistry and Molecular Biology, in March 2016. 

A part of my laboratory has been engaged with performing fundamental studies on the biochemistry and structural biology of base excision repair (BER) complexes involved in the repair of non-bulky lesions formed in mtDNA. We have identified components of the mitochondrial replication and transcriptional machinery that interact directly with the NEIL DNA glycosylases, which are oxidized-lesion specific enzymes that catalyze the first step of BER. Furthermore, we are interested in three aspects of NEIL-enzyme regulation including (1) identifying the subcellular localization of NEIL enzymes in response to oxidative stress, (2) regulation of NEIL activity by post- translational modifications, and (3) structure-driven functional studies that seek to identify unique protein interacting partners of the NEIL enzymes, which are essential for successful repair (Fig. 1). These aspects are intimately involved with understanding the role of environmental factors in driving mutagenesis. 

More recently, my laboratory has been involved with performing experiments to aid in the reclassification of variants of uncertain significance (VUS) in mismatch repair genes whose loss of function leads to a hereditary cancer syndrome known as Lynch syndrome (LS). VUSs are challenging for patient medical management as functional information regarding the variant is unavailable. The focus of my lab is to use functional assays to recharacterize VUSs as either pathogenic (leads to a higher risk for disease) or benign (not disease causing) (Fig. 2). We are currently extending these studies to analyze the contribution of environmental toxicants such as cadmium (a known carcinogen) in driving cancer progression in LS patients. 

▼   Wito Richter, Ph.D.

Wito Richter, Ph.D.Wito Richter, Ph.D.

Assistant Professor

Ph.D., Leipzig University, Leipzig, Germany, 2000

Recent Publications

 

Research Interests

Cyclic nucleotide signaling and cAMP phosphodiesterases

Cyclic adenosine monophosphate (cAMP) is a ubiquitous second messenger that regulates a myriad of physiological processes. Its cellular concentration is determined by the rate of its synthesis by adenylyl cyclases and the rate of its degradation by cyclic nucleotide phosphodiesterases (PDEs). The mammalian PDEs encompass a large number of isoenzymes grouped into eleven families. Our laboratory explores the structure, regulation and physiological functions of Type 4 PDEs (PDE4s), the largest and most widely expressed PDE family.

The PDE4 family comprises four genes, PDE4A-D, that together are expressed as more than 25 protein variants. PDE4 inactivation produces a number of therapeutic benefits, including anti-inflammatory and memory- and cognition-enhancing effects, and has been pursued as a therapeutic approach for a number of indications. However, the non-selective PDE4 inhibitors available to date also produce significant side effects that limit their clinical utility. Individual PDE4 variants exert unique and non-overlapping physiological and pathophysiological roles by controlling cAMP levels in microdomains of signaling, to which they are tethered via variant-specific protein/protein or protein/lipid interactions, rather than on the global cellular scale. Our group aims to dissect the roles of individual PDE4 variants in diverse cells and tissues to verify individual PDE4s and PDE4 signaling complexes as drug targets. In addition, we explore regulatory and structural differences between individual PDE4s for the development of isoform-selective PDE4 inhibitors with an improved safety profile compared to the non-selective PDE4 inhibitors available to date.

Research training positions are available for postdoc and graduate students. Email richter@southalabama.edu.

▼   Mark Swingle Ph.D.

Mark Swingle, Ph.D.Mark Swingle, Ph.D.

Associate Professor

 

 

Joint Appointments

▼   Singh, Ajay Ph.D.

Physician name, Ph.D.Dr. Singh, Ajay, Ph.D.

Professor

Postdoctoral Studies, UNMC/Eppley Cancer Institute
Ph.D., Devi Ahilya University 

 

Research Interests

The molecular mechanisms of cancer progression, metastasis and chemoresistance, and utilizing the mechanistic insight to develop novel approaches for cancer therapy and prevention. Dr. Singh has published extensively (over 100 research articles, reviews and book chapters) and holds five US patents. He also serves on the editorial boards of several scientific journals. Research programs in his laboratory have been supported through all major federal funding agencies, including NIH and DOD, and by the state of Nebraska’s and Alabama’s health departments. Dr. Singh actively serves on grant review panel boards of national and international funding agencies and private foundations that provide support for cancer research. 

▼   Santanu Dasgupta Ph.D.

Simon Grelet Ph.D.Santanu Dasgupta, Ph.D.

Assistant Professor

 

▼   Seema Singh Ph.D.

Aishwarya Prakash, Ph.D.Seema Singh, Ph.D.

Associate Professor

Postdoctoral Studies, UNMC/Eppley Cancer Institute
Ph.D., Devi Ahilya University

 

Research Interests

Inflammation, immunobiology, nanotechnology, and cancer health disparities. She and her team are actively investigating the role of inflammatory cytokines and stress hormones in cancer progression and metastasis. They are also developing novel nanoformulations to improve drug delivery. Research programs in her laboratory have been supported from the National Cancer Institute (NCI/NIH).  Dr. Singh has published extensively (over 90 research articles, reviews and book chapters) and holds US patents. She has co-founded a Biotech start-up company, Tatva Biosciences., and actively serves on the editorial boards of several scientific journals and grant review panels of national and international funding agencies. 

 

Singh, Ajay, Ph.D., Professor
Mitchell Cancer Institute
Email: asingh@health.southalabama.edu • (251) 445-9873 

Singh, Seema, Ph.D., Professor
Mitchell Cancer Institute
Email: seemasingh@health.southalabama.edu • (251) 445-9873

Dasgupta, Santanu, Ph.D., Assistant Professor
Mitchell Cancer Institute 
Email: dasgupta@southalabama.edu • (251) 471-7719